Small interfering RNA (siRNA) represents a promising type of therapeutics exploiting the mechanism of RNA interference for silencing target genes. Yet, the clinical translation of siRNA has been limited due to delivery challenges. We recently described a novel Ca2+- siRNA nanocomplex capable of strong but reversible complexation, siRNA protection, cellular uptake, and cytoplasmatic unloading of its cargo. Here, we investigated the importance of Ca2+compared to other bi- or tri-valent cations in creating these nanocomplexes, and the cytocompatibility of the various nanocomplexes. Further, we elucidated cellular entry and endosome release mechanisms of Ca2+-siRNA nanocomplexes. The nanocomplexes were prepared by incubating siRNA (50 nM final) with either Ca2+, Mg2+, Zn2+, Ba2+, Mn2+, Fe2+ or Fe3+ ions (5 mM for divalent and 3.33mM for Fe3+) Of these nanocomplexes, only those prepared with Ca2+, Mg2+, Ba2+ andFe3+ were cytocompatible as judged by PrestoBlue® for cell viability. Effective eGFP silencing (~80%) in GFP expressing mouse colon carcinoma CT26 cells was achieved only with Ca2+- siRNA nanocomplexes. Cell uptake studies (using confocal microscopy) and silencing experiments (using flow-cytometry), were performed using different inhibitors of several possible entry mechanisms: Dynasore, Pitstop2®, EIPA, Nifedipine, Cadmium and Genistein. We revealed that the major endocytic pathways involved in the entry of Ca2+-siRNA nanocomplexes are clathrin and dynamin-dependent. Treatment with Bafilomycin, which inhibits endosome acidification after Ca2+ entry to endosomes, completely abolished siRNA-mediated silencing indicating that Ca2+ is critical for the endosomal unloading through a “proton sponge” effect. In conclusion, Ca2+ is a critical component for particle assembly, particle uptake and endosomal escape.