Staphylococcus aureus orthopedic implant-associated infection is a devastating surgical complication. Current antibiotic regimens include combination with rifampin (10-15 mg/kg/day) which has dose-dependent bactericidal activity. However, treatment regimens have not been optimized owing to lack of data on bacterial dynamics and antibiotic pharmacokinetics at the site of infection. We employed a non-invasive holistic approach using dynamic 11C-rifampin positron emission tomography (PET) to image patients with S. aureus bone infection (n=3) or controls (n=12). The area under the concentration-curve bone to plasma ratio was 0.14, indicating lower bone penetration than previously thought. PET-based pharmacokinetic modeling predicted rifampin bone concentrations and facilitated studies in mice. High-dose rifampin (equipotent to human 35 mg/kg/day) was required to achieve adequate bone concentrations, enhanced bacterial killing and shortened the duration of therapy from 6 to 4 weeks without increasing treatment failure rates. High-dose rifampin ameliorated antibiotic resistance (0% vs. 38%; P=0.04), mitigated bone remodeling (P<0.01) and reduced selection of mutations in genes related to bacterial resistance and persistence. High-dose rifampin has optimal bone exposure that results in favorable bacterial dynamics and improve treatment for S. aureus orthopedic implant infection.